Snakemake is indeed a very useful tool for workflow development and management. However, in certain scenarios, it can also bring some issues. Coincidentally, I discovered a rather unconventional way of using it: only use Snakemake’s dependency handling and task management, while generating scripts separately.

Writing workflows is a common task in bioinformatics analysis, and a mature and well-designed tool can greatly improve the efficiency of work.

bash-it is a collection of bash plugins inspired by oh-my-zsh. Installing bash-it not only makes the bash interface more stylish but also makes the command line more convenient.

I have been using argparse for command line parsing, but it wasn’t until recently that I discovered it can be used to create subcommands.

There’s not much to say, just commemorating my first independent completion of a command-line program~

It seems I hit a bug again…

When installing software, I thought that the portability and feasibility of using conda were better, so I decided to try it out and see how Snakemake works…

Because of my work, I had to learn some basic concepts and methods for single-cell research. I wrote this note to record it.

I had read about Git tutorials a long time ago, but I never actually used it. Now that I’m using it, I feel like I’ve become a programmer in some way! Operation Method Records User Initialization, ...

Bought a VPS; the monthly traffic usage is so low that it’s really a waste… So let’s make better use of it. After all, it costs $5 per month.